I am trying to set up a local instance. When running Clip adapter sequences I get the following error:
fastx_clipper: Invalid quality score value (char 'J' ord 74 quality value 41) on line 36 gzip: stdout: Broken pipe I'm stuck on where to try to trouble-shoot this. This is on groomed fastq data in my history. I have the same error on other datasets. Other tools (Bowtie, FastQC) work on this dataset. I'm confused why it is gzip (but I clearly don't understand how Galaxy stores the data). Thanks for any suggestions! ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
