> I made some changes to the cufflinks and tophat wrapper to pull gtf files 
> from an indexed loc file as  opposed to from history. The diff’s are 
> attached. I made it an optional feature. Please let me know if this makes its 
> way into galaxy-central.

Ilya,

This looks like a good start. A couple questions:

(1) Do you have a sample GTF indices file similar to e.g. 
bowtie_indices.loc.sample ?
(2) Would it be useful to provide GTF index files in Cuffcompare, Cuffdiff, and 
Tophat as well?

Thanks,
J.

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to