Hi Peter,

Thanks for the reply. 

Does anyone know how to execute a specific workflow from the command prompt? 
E.g. run the workflow as a job? Then I could perhaps write a workflow wrapper 
tool to overcome this shortcoming.

Regards,

Pieter.

-----Original Message-----
From: Peter Cock [mailto:p.j.a.c...@googlemail.com] 
Sent: donderdag 13 oktober 2011 12:34
To: Lukasse, Pieter
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Questions about reusing workflows

Hi Pieter,

You cannot currently embed on workflow within another, although that has been 
suggested as a nice extension to Galaxy.

You can for instance start a new history, run workflow #1 with N tool steps, 
then workflow #2 with M tool steps, and save this history as a new workflow #3 
with N+M tool steps. This has the downside that if either workflow #1 or #2 is 
changed, this does not alter #3 - which is an independent copy.

Peter



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