Hi, 

I have just installed a local instance of galaxy. Though I am not too familiar 
with unix, I preferred a local instance because of large amount of data I have 
to process. However, I am unable to upload a file more that 2 GB in size, the 
error log is pased below 

127.0.0.1 - - [19/Oct/2011:15:06:08 +0800] "POST /tool_runner/index HTTP/1.1" 
500 - "http://127.0.0.1:8080/tool_runner?tool_id=upload1"; "Mozilla/5.0 
(Macintosh; Intel Mac OS X 10.7; rv:6.0.2) Gecko/20100101 Firefox/6.0.2" 
Debug at: http://127.0.0.1:8080/_debug/view/1319007854 
---------------------------------------- 

Exception happened during processing of request from ('127.0.0.1', 61099) 
Traceback (most recent call last): 
File 
"/Users/amit/galaxy-python/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
 line 1053, in process_request_in_thread 
self.finish_request(request, client_address) 
File 
"/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/SocketServer.py",
 line 322, in finish_request 
self.RequestHandlerClass(request, client_address, self) 
File 
"/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/SocketServer.py",
 line 617, in __init__ 
self.handle() 
File 
"/Users/amit/galaxy-python/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
 line 432, in handle 
BaseHTTPRequestHandler.handle(self) 
File 
"/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/BaseHTTPServer.py",
 line 329, in handle 
self.handle_one_request() 
File 
"/Users/amit/galaxy-python/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
 line 427, in handle_one_request 
self.wsgi_execute() 
File 
"/Users/amit/galaxy-python/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
 line 287, in wsgi_execute 
self.wsgi_start_response) 
File 
"/Users/amit/galaxy-python/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/urlmap.py",
 line 202, in __call__ 
return app(environ, start_response) 
File 
"/Users/amit/galaxy-python/galaxy-dist/lib/galaxy/web/framework/middleware/xforwardedhost.py",
 line 21, in __call__ 
return self.app( environ, start_response ) 
File 
"/Users/amit/galaxy-python/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/config.py",
 line 164, in __call__ 
app_iter = self.application(environ, start_response) 
File 
"/Users/amit/galaxy-python/galaxy-dist/lib/galaxy/web/framework/middleware/translogger.py",
 line 68, in __call__ 
return self.application(environ, replacement_start_response) 
File 
"/Users/amit/galaxy-python/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py",
 line 226, in __call__ 
return self.respond(environ, start_response) 
File 
"/Users/amit/galaxy-python/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py",
 line 399, in respond 
if self.xmlhttp_key in req.params: 
File 
"/Users/amit/galaxy-python/galaxy-dist/eggs/WebOb-0.8.5-py2.6.egg/webob/__init__.py",
 line 900, in params 
params = self.str_params 
File 
"/Users/amit/galaxy-python/galaxy-dist/eggs/WebOb-0.8.5-py2.6.egg/webob/__init__.py",
 line 892, in str_params 
return NestedMultiDict(self.str_GET, self.str_POST) 
File 
"/Users/amit/galaxy-python/galaxy-dist/eggs/WebOb-0.8.5-py2.6.egg/webob/__init__.py",
 line 818, in str_POST 
keep_blank_values=True) 
File "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/cgi.py", 
line 508, in __init__ 
self.read_multi(environ, keep_blank_values, strict_parsing) 
File "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/cgi.py", 
line 632, in read_multi 
environ, keep_blank_values, strict_parsing) 
File "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/cgi.py", 
line 510, in __init__ 
self.read_single() 
File "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/cgi.py", 
line 647, in read_single 
self.read_lines() 
File "/Users/amit/galaxy-python/galaxy-dist/lib/galaxy/web/framework/base.py", 
line 253, in read_lines 
self.read_lines_to_outerboundary() 
File "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/cgi.py", 
line 697, in read_lines_to_outerboundary 
line = self.fp.readline(1<<16) 
File 
"/Users/amit/galaxy-python/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserver.py",
 line 467, in readline 
data = self.file.readline(self.length - self._consumed) 
File 
"/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/socket.py", 
line 409, in readline 
bline = buf.readline(size) 
OverflowError: long int too large to convert to int 

Please help me to fix this, the python version is 2.6.6. Thank you. 

Sincerely, 

Amit, 

Germline biology group 
Temasek Life Sciences Laboratory 
Singapore 
-- 
Amit Anand 
Germ Line Biology Group 
Temasek Life Sciences Laboratory 
1, Research Link 
National University of Singapore 
Singapore, 117604 

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