Any more thought on how to accomplish this without  my current hack? Ideally it 
would be great if this feature could become part of galaxy-central. This is a 
feature that we would really like to implement so that our reports can link to 
the output files. 



-----Original Message-----
From: James Taylor [] 
Sent: Friday, October 21, 2011 9:47 AM
To: Chorny, Ilya
Subject: RE: [galaxy-dev] FW: how do I pass the URL of the input and output 
files to my tool wrapper?

Excerpts from Chorny, Ilya's message of 2011-10-21 01:51:03 +0000:
> I get the following error from routes
> AttributeError: 'thread._local' object has no attribute 'mapper'

Okay, what I suspected. This is a product of the fact that job running is 
decoupled from the web frontend. The job runner doesn't necessarily live in the 
same process or even on the same machine as the web interface. You could have 
multiple web interfaces serving different base urls feeding one job runner. 

I don't have any simple answer to this. You could try to initialize route's 
mapper in the job runner, but I think this would be a big mistake. Instead you 
probably want to capture the URL somehow when the job is created. I need to 
think about it some more.
James Taylor, Assistant Professor, Biology / Computer Science, Emory University

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