On 26.10.2011 16:13, Jeremy Goecks wrote:
Hi Ross,
I checked the following:
wget<link> works, I can download the file. It's not saved as<Historyname>.tar.gz but as
"export_archive?id=a69ee3e00cb4d02c". Anyway, I can unpack the archive with tar xfvz.
hg head:
Änderung: 5955:949e4f5fa03a
Marke: tip
Nutzer: Nate Coraor<n...@bx.psu.edu>
Datum: Mon Aug 29 14:42:04 2011 -0400
Zusammenfassung: Missing import in library_contents.py
Where can I find the file (I assume?) paster.log?
Best place to look for the error is in the job table. Try this query for your
database:
--
select id, state, command_line, stdout, stderr from job where
tool_id='__EXPORT_HISTORY__' order by id desc;
--
and look at the stderr column for some information about the problem. Please
send us the command line and the stderr for the problematic jobs; this should
help us figure out what's going on.
Thanks,
J.
Hi Jeremy,
76 | ok | python
/home/cweinberg/Software/galaxy-dist/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py
http://main.g2.bx.psu.edu/history/export_archive?id=a69ee3e00cb4d02c
./database/tmp/tmpbxuXL2 --url | Error unpacking tar/gz archive: [Errno
2] No such file or directory: './database/tmp/tmpbxuXL2/tmpBn0UbN' <open
file '<stderr>', mode 'w' at 0x7f1c2cc991e0> | Error cleaning up history
import job: [Errno 2] No such file or directory:
'./database/tmp/tmpbxuXL2/history_attrs.txt'
This is one of the db entries, the other ones are similar (different
tmp-directories).
Looks like a problem with the temporary directories..
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