BTW, I am not sure if PBS works with drmaa. If not then the code will need to 
be ported to work with pbs.

Ilya


-----Original Message-----
From: galaxy-dev-boun...@lists.bx.psu.edu 
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya
Sent: Monday, October 31, 2011 3:27 PM
To: Lloyd Brown; Galaxy Dev List
Subject: Re: [galaxy-dev] Clusters, Runners, and user credentials

Lyod,

See Nate's email below Title: Actual user code. We have been working on 
implementing this feature in galaxy. The code is still in development but feel 
free to test it out and let us know how it works for you.

Best,

Ilya 

-----Original Message-----
From: galaxy-dev-boun...@lists.bx.psu.edu 
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Lloyd Brown
Sent: Monday, October 31, 2011 2:35 PM
To: Galaxy Dev List
Subject: [galaxy-dev] Clusters, Runners, and user credentials

I'm a systems administrator for an HPC cluster, and have been asked by a 
faculty member here to try to get galaxy to work on our cluster.
Unfortunately, there are one or two outstanding questions that I can't seem to 
find the answer to, and I'm hoping someone here can help me out.

In particular, is galaxy, and the PBS runner specifically, capable of 
submitting jobs under specific user names?  Essentially, if I set up galaxy to 
push jobs to our cluster, will they all show up under one user credential (eg. 
the "galaxy" user), or can we set it up so that the user logged into galaxy, is 
used to submit the job?

This one is kindof a show-stopper, since our internal policies require that all 
jobs have a specific user credential, with one person per username.

Thanks,
Lloyd


--
Lloyd Brown
Systems Administrator
Fulton Supercomputing Lab
Brigham Young University
http://marylou.byu.edu
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