Dear All,

I am running the API script and it intermittently fails to run a workflow on a file dropped into the import directory (the file is imported and the workflow starts running, but its jobs hang or fail). Galaxy uses a condor dramaa job runner. When I look at the galaxy script being run by condor, it sets the PYTHONPATH and then executes the following command, which also fails at the command line.

galaxy@vm-debian:~/galaxy-dist$ python /home/galaxy/galaxy-dist/tools/filters/ --input=/tmp/galaxy/datafiles/000/dataset_105.dat --out_file1=/tmp/galaxy/datafiles/000/dataset_106.dat --column=7 --style=num --order=DESC
Traceback (most recent call last):
File "/home/galaxy/galaxy-dist/tools/filters/", line 15, in <module>
    from galaxy import eggs
ImportError: No module named galaxy

How can I resolve this error? I would like to be able to test such commands at the command line, as well as ensure that galaxy workflows run reliably.

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