John, Ilya, I get further with sequence type inputs but it looks like JobWrapper.get_output_datasets_and_fnames() is not returning the right thing when outputs_to_working_directory = True
BTW, the base Data.split() method is broken after the updates to Sequence.split() since it wasn't updated to expect HistoryDatasetAssociations rather than filenames. Could you take a look at that when you get a chance? --nate Duddy, John wrote: > The datatype you are using does not define a split method. Are you working > with our in-progress gz type or fastqillumina? > > John Duddy > Sr. Staff Software Engineer > Illumina, Inc. > 9885 Towne Centre Drive > San Diego, CA 92121 > Tel: 858-736-3584 > E-mail: jdu...@illumina.com<mailto:jdu...@illumina.com> > > From: Chorny, Ilya > Sent: Wednesday, November 02, 2011 11:50 AM > To: Duddy, John > Cc: Nate Coraor (n...@bx.psu.edu); galaxy-dev@lists.bx.psu.edu > Subject: Looks like actual user breaks splitting > > Hey John, > > Any thoughts? > > Ilya > > Traceback (most recent call last): > File > "/home/galaxy/ichorny/galaxy-central/lib/galaxy/jobs/runners/tasks.py", line > 73, in run_job > tasks = splitter.do_split(job_wrapper) > File > "/home/galaxy/ichorny/galaxy-central/lib/galaxy/jobs/splitters/multi.py", > line 73, in do_split > input_type.split(input_datasets, get_new_working_directory_name, > parallel_settings) > File "/home/galaxy/ichorny/galaxy-central/lib/galaxy/datatypes/data.py", > line 473, in split > raise Exception("Text file splitting does not support multiple files") > Exception: Text file splitting does not support multiple files > > Ilya Chorny Ph.D. > Bioinformatics Scientist I > Illumina, Inc. > 9885 Towne Centre Drive > San Diego, CA 92121 > Work: 858.202.4582 > Email: icho...@illumina.com<mailto:icho...@illumina.com> > Website: www.illumina.com<http://www.illumina.com> > > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
