Oren Livne wrote:
> Dear All,
> I am running the example_watcher_folder.py API script and it
> intermittently fails to run a workflow on a file dropped into the
> import directory (the file is imported and the workflow starts
> running, but its jobs hang or fail). Galaxy uses a condor dramaa job
> runner. When I look at the galaxy script being run by condor, it
> sets the PYTHONPATH and then executes the following command, which
> also fails at the command line.
Is the intermittent failure the same error was below?
> galaxy@vm-debian:~/galaxy-dist$ python
> --column=7 --style=num --order=DESC
> Traceback (most recent call last):
> File "/home/galaxy/galaxy-dist/tools/filters/sorter.py", line 15,
> in <module>
> from galaxy import eggs
> ImportError: No module named galaxy
This won't work from the command line unless you set PYTHONPATH the same
way that the framework does (i.e. PYTHONPATH=~/galaxy-dist/lib).
> How can I resolve this error? I would like to be able to test such
> commands at the command line, as well as ensure that galaxy
> workflows run reliably.
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