Hello Jeremy,

Galaxy does not come with a display tool for UCSC. There is an integrated display tool, under Visualization, commonly called "Trackster". The icon for Trackster is a set of colored, stacked bars that when hovered over is labeled "Visualize in Trackster".


If you do want to display at the public (or a local mirror) UCSC browser, then some additional set-up is required. Here are the links to the details, including a tutorial:

http://wiki.g2.bx.psu.edu/Admin/Config/Apache%20Proxy (scroll to Display at UCSC)

http://wiki.g2.bx.psu.edu/Admin/Tools/External%20Display%20Applications%20Tutorial

http://wiki.g2.bx.psu.edu/Admin

Hopefully this helps to get you started,

Jen
Galaxy team

On 11/2/11 3:52 PM, Jeremy Villalobos wrote:
Hello:

The display tool for UCSC that comes with the local installation package
does not work.  uploading a bigbed file (from the test-data that comes
with the package) does not trigger the webapp to show an option to view
the file using UCSC's viewer.

How do I enable this ?

To reproduce the issue, simply download galaxy using mercurial.  change
the host address to 0.0.0.0.  and load the bigbed file from the
test-data directory.
Once the file uploads, the user should expect to see a display tool
added to the files description (on the right), but nothing is shown.

Thanks

Jeremy
UNCC


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