Hi. I have an illumina 1.9 file that I renamed, groomed, and interlaced to get to its current state (see first 2 sets of paired sequences below)
@1 TTTTTTATCAAAAAAAATGCATATACGAAATTTTTATTTTTACTTTTAAAAATTGAAAGTTGAAAATTTTAAATAAATGAAAAATAAATTAAACCAATTA +1 @CCCDDC?DDDFHHHGIIGJJIIIHEIJHGECIDHHHGIEGIGDHDGIHGHF4IGIHEGIJJJJIGHCFIJIHDHF4IIJIHHIGIGFHGHHFFFDF@@B @1 TTTATCAAAATATTTTCAAGCTAATTACAAGACATACTTACTTAAGTAAATTAAGATATATGGTTAATATTGCATTAAATAAGCTTTAATAAAGAGATAA +1 @CCDFFDFHHHGHJJJIIJJJIIIJJIIJIHIGGIBHGIHIHHIGIIIGHEIIICHGGHDHGIHHDIGIIGGGGICHGGDGFEG>EADECC7?CCDFD@C @2 ATTTATACATCTGTTGAACAAGTTATTAATTCTGTTTTCGATCTTTTTAATGTTATCTTTTACTTGTCCTCCCACATAGATCTTCATTCCTAAATTTATA +2 CCCC;,(>5(5((>3;AC>@@;3;?:DEHA;=A@55)((8)(6HGB8F?9<B?99)CHGGFCC?1)8)A+EC:CAA:F@FECA+B9C:BD4DDB2+;=+B @2 TATCCATACAAACTTATCATTCACTTTCAGTAGTAACCTATTCTTATTTTGTTTAACTTCAAATACCTTAAAAGGCCCTTCCCAAACACTATCTGACTTC +2 =8?;A=B?CFBBHGG2ACAC@@9E?F@HIIGHGI<+1?E9EEDHEC<GHBGHIGBFHCHFG@BB8BFFHCG:=;(=@D=C3?.;=;?DEC>C3>C(>>C> Now I want to do an initial assembly with velvetoptimizer on my local instance of Galaxy. When I run velvetoptimizer, calling this file a fastq file of short paired reads, it fails and I get this error message: SyntaxError: unexpected character after line continuation character Any ideas on what I'm doing wrong? Thanks! -Lucinda ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
