On Nov 16, 2011, at 4:12 PM, Chorny, Ilya wrote:

> The uploaded files need grooming, so change your Copy data into Galaxy? 
> selection to be Copy files into Galaxy instead of Link to files without 
> copying into Galaxy so grooming can be performed.

BAMs in Galaxy must be sorted.  Since the "link to…" option can't modify the 
source file, the BAM can't be "uploaded" unless it's sorted prior to uploading.

--nate

>  
> Thoughts?
>  
> Thanks,
>  
> Ilya
>  
> Ilya Chorny Ph.D.
> Bioinformatics Scientist I
> Illumina, Inc.
> 9885 Towne Centre Drive
> San Diego, CA 92121
> Work: 858.202.4582
> Email: icho...@illumina.com
> Website: www.illumina.com
>  
>  
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