On Nov 25, 2011, at 6:52 AM, Ivan Merelli wrote:
> I'm trying to use rgenetics in galaxy, but I have
> some problem in installting rpy-1.0.3 with R-2.13.1.
> I found this guide, which is about the same problem of mine:
> but didn't work for me (although the part about the
> modulefile is quite obscure for me). The problem seems
> to be correlated to an header file (Rdevices.h) which
> is no more present in the latest R distribution.
> Any hints to solve this
> problem? May I use rpy2?
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There is information on solving this available via a web search -
instance. In short,
Unpack rpy-1.0.3 and patch the following files:
version = re.search(" +([0-9]\.[0-9]+\.[0-9])", output)
include_dirs = [ os.path.join(RHOME.strip(), 'include'),
'src', '/usr/share/R/include', '/apps/R/2.13.1/include' ]
* Build rpy with
python setup.py install
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