On Nov 21, 2011, at 11:09 AM, Toqa Manasrah wrote:

> Hi everybody,
>  
> I am integrating my software ViSpA inside galaxy and I have two questions:
> 1: the main program is a shell script (.sh) which call another shell script, 
> which call Java executables. should I include any interpreter inside the .xml 
> <command > tag?
> and what that should be?
>  
> 2. how to guarantee that the output files destination are on the use local 
> host rather than the server which is running galaxy?

Hi Tuqa,

Can you clarify this second question?  I'm not sure what you're asking.

Thanks,
--nate

>  
> Thanks and regards,
>  
> Tuqa.
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