Hi Jeremy,
I'm trying to view boxplots (png) and FastQC (html) output. I  can view 
other output types like tabular in the published histories, but not png or 
html.

Thanks,
Liisa

Liisa Koski 
Bioinformatics Programmer
Phone: 518-309-3079, E-Mail: liisa.ko...@dnalandmarks.ca
Postal Address: DNA LandMarks Inc, St-jean-sur-Richelieu, J3B 6X3 Québec 
CANADA
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From:
Jeremy Goecks <jeremy.goe...@emory.edu>
To:
Liisa Koski <liisa.ko...@dnalandmarks.ca>
Cc:
<galaxy-dev@lists.bx.psu.edu>
Date:
2011-11-28 13:23
Subject:
Re: [galaxy-dev] Can't view data files from published histories, only 
imported histories



Liisa,

This functionality works fine in some instances, e.g. for this history:

http://main.g2.bx.psu.edu/u/cartman/h/repeats

I'd guess that it's related to the particular dataset type. What type of 
dataset are you trying to view when you see this error? Can you view any 
datasets from the history?

Thanks,
J.

On Nov 28, 2011, at 1:11 PM, Liisa Koski wrote:

Hi, 
I found a weird bug. I am trying to view data files by clicking on the 
'eye' icon from a published history on my local galaxy installation. When 
I click on the eye I get a 'Server Error' and in the log file I get the 
following. 

Error - <type 'exceptions.NameError'>: global name 'data' is not defined 
URL: http://domain:8080/u/user/d/8bdb720fee635874 
File 
'galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', 
line 143 in __call__ 
  app_iter = self.application(environ, start_response) 
File 'galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in 
__call__ 
  return self.application(environ, start_response) 
File 'galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 
632 in __call__ 
  return self.application(environ, start_response) 
File 'galaxy_dist/lib/galaxy/web/framework/base.py', line 160 in __call__ 
  body = method( trans, **kwargs ) 
File 'galaxy_dist/lib/galaxy/web/controllers/dataset.py', line 693 in 
display_by_username_and_slug 
  trans.response.set_content_type( data.get_mime() ) 
NameError: global name 'data' is not defined 

If I import the history into my own history pane I can click on the eye 
and see the data with no errors. 

Any ideas how I can see the data from the published histories? 

Thanks, 
Liisa 

Liisa Koski 
Bioinformatics Programmer
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