Hello,

Perhaps you have found this in the source already, but if not, a version of the Tophat tool for SOLiD is available. It is on the test server only, should be used with caution, and is completely unsupported.

In the Galaxy source at bitbucket, please see:
tophat_color_wrapper.xml at
https://bitbucket.org/galaxy/galaxy-central/src/b751663f3f64/tools/ngs_rna

On the Galaxy test server under "NGS: RNA Analysis -> Tophat for SOLiD"
http://test.g2.bx.psu.edu/

Hopefully this helps!

Best,

Jen
Galaxy team

On 9/6/11 12:47 AM, KOH Jia Yu Jayce wrote:
Hi,

I am looking for tophat xml that supports SOLID colorspace. Is it
anywhere available?

Thanks a lot.



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