On 30/11/2011 11:58, Peter Cock wrote:
> On Wed, Nov 30, 2011 at 9:49 AM, Peter van Heusden wrote:
>> Yes, this went away with newer versions of BLAST (and BLAST+).
>> The 2.2.15 version is from 2006.
> OK, that would explain why I didn't find the issue myself
> during the development.
>
>> I've added test data and tests to the tool's XML file.
> Is this on a bitbucket fork?
Yes, its now at https://bitbucket.org/pvanheus/galaxy

I'm still trying to get my head around how to use mercurial, so things
are no doubt messy. Look for changes from p...@sanbi.ac.za
>> Do you know how to run a single tool's test in Galaxy?
>>
>> Peter
> Yes, run_functional_tests.sh supports this. You'll need the
> test ID, which you can work out from the wrapper XML, or
>
> $ ./run_functional_tests.sh -list
> ...
>
> Then, in this case,
>
> $ ./run_functional_tests.sh -id blastxml_to_tabular
> ...
Ok doing that generates all sorts of stuff but ends with:

ok

----------------------------------------------------------------------
Ran 9 tests in 100.146s

OK


which sounds encouraging.

Peter
> Peter

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