Hi Enis and Dannon,
thanks for the reply.
Yes, I should have tried 'sudo su' ... this works.
Ok, integrating CADDSuite was no problem at all after this and
everything seems to run well.
However, when I create an AMI, terminate the cluster and create a new
cluster using the new AMI, both /mnt/galaxyData and /mnt/galaxyTools do
not exist anymore, i.e. /dev/sdg3 and /dev/sdg4 are not mounted
automatically.
If I mount those two devices manually, everything runs smoothly again.
So, is there anything that I might have forgotten to do while creating
the AMI? Is there a way to make sure that those devices will be mounted
automatically?
Regards,
Marcel
On 11/30/11 3:57 PM, Enis Afgan wrote:
Hi Marcel,
It would be best to use 'galaxy' user to add any tools. To do so, after
you've logged in as ubuntu user, simply execute:
sudo su galaxy
and you will become galaxy user. You can then make the desired
modifications.
Good luck,
Enis
On Wed, Nov 30, 2011 at 3:42 PM, Greg Von Kuster<g...@bx.psu.edu> wrote:
Hello Marcel,
In the future, please send all questions like this to the galaxy-dev
mailing list, as doing so will streamline the process of getting a timely
answer. I believe Enis is best able to answer your questions.
Thanks!
On Nov 30, 2011, at 9:29 AM, Marcel Schumann wrote:
Hi Greg,
I'm currently trying to create a GalaxyCloudman version that includes
CADDSuite.
Thus, I launched GalaxyCloudman as described in your wiki and tried to
modify it afterwards.
Well, starting cloudman worked without any problems... so far, so good
:-)
As described on
http://wiki.g2.bx.psu.edu/Admin/Cloud/Customize%20Galaxy%20Cloud
I could then log-in via ssh as user 'ubuntu' (not as user 'galaxy').
However, all files of the galaxy installation belong to user and group
'galaxy'.
Thus my question: How should users be able to customize cloudman? Is
there some trick by which I can log-in as 'galaxy' or do you have any other
idea how to make this work ? ;-)
Sorry Greg, if you are not the correct contact in this case, but I found
not specific contact or mailing list for cloudman. Perhaps, you could just
forward this mail in that case ...
Cheers,
Marcel
--
Marcel Schumann
University of Tuebingen
Wilhelm Schickard Institute for Computer Science
Division for Applied Bioinformatics
Room C313, Sand 14, D-72076 Tuebingen
phone: +49 (0)7071-29 70437
fax: +49 (0)7071-29 5152
email: schum...@informatik.uni-tuebingen.de
Greg Von Kuster
Galaxy Development Team
g...@bx.psu.edu
--
Marcel Schumann
University of Tuebingen
Wilhelm Schickard Institute for Computer Science
Division for Applied Bioinformatics
Room C313, Sand 14, D-72076 Tuebingen
phone: +49 (0)7071-29 70437
fax: +49 (0)7071-29 5152
email: schum...@informatik.uni-tuebingen.de
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