On Dec 5, 2011, at 3:02 PM, Leon Mei wrote:

> Dear all,
> 
> Today I upgraded our NBIC server from an older release (fetched on July 5th, 
> 2011) to the latest version in galaxy-dist. After execute "hg update" and "sh 
> manage_db upgrade" and merge some local configurations, I successfully 
> restarted the server. However once I access the server from a web browser, 
> Galaxy crashed. 
> 
> Log file complains that some tables don't exist:
> ==
> ProgrammingError: (ProgrammingError) (1146, "Table 
> 'galaxy.user_quota_association' doesn't exist") u'SELECT 
> user_quota_association.id AS user_quota_association_id, 
> user_quota_association.user_id AS user_quota_association_user_id, 
> user_quota_association.quota_id AS user_quota_association_quota_id, 
> user_quota_association.create_time AS user_quota_association_create_time, 
> user_quota_association.update_time AS user_quota_association_update_time 
> \nFROM user_quota_association \nWHERE %s = user_quota_association.user_id' 
> [1L]
> ==
> 
> A check in mysql confirms that only the following 3 tables were added during 
> the migration from schema 79 to 85: 
> * default_quota_association      
> * quota
> * tool_shed_repository
> 
> The following 9 tables are missing:
> cloud_*, user_quota_association, group_quota_association

Hi Leon,

Were there any errors output when you ran mange_db.sh upgrade?

--nate

> 
> Has anyone experienced a similar problem? Any hint on how to solve this is 
> highly appreciate!
> 
> Thanks,
> Leon 
> 
> 
> -- 
> Hailiang (Leon) Mei
> Netherlands Bioinformatics Center   
> BioAssist NGS Taskforce 
>  - https://wiki.nbic.nl/index.php/Next_Generation_Sequencing
> Skype: leon_mei    Mobile: +31 6 41709231
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