I am unable to get VCF files to display in IGV in my local galaxy installation. BAM files display fine, however, whenever I click on the link to display a VCF file I get the following error message: "You must import this dataset into your current history before you can view it at the desired display application." When I return to Galaxy, my history is indeed changed to a new empty history.

I think this may have to do with the fact that I had to setup Apache to allow unauthenticated access to the bam/vcf files (see my notes on how I did this at https://sites.google.com/site/princetonhtseq/tutorials/visualization-with-galaxy-and-igv/igv-as-a-display-application-in-galaxy). However, I can't figure out why BAM files work and VCF files don't. Any advice or insight would be appreciated.


--
Lance Parsons - Scientific Programmer
134 Carl C. Icahn Laboratory
Lewis-Sigler Institute for Integrative Genomics
Princeton University

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

 http://lists.bx.psu.edu/

Reply via email to