> In recent versions, the setting in the Galaxy config to keep job files is:
>    cleanup_job = never
> I discovered the problem.  My pbs queue has a wall time restriction of 3600 
> seconds.  
> Is there a way to configure Galaxy to keep the job files for only failed 
> jobs?  I'd like to keep these two settings on, but find it unnecessary if 
> jobs successfully complete

For this, in your config you can use:

cleanup_job = onsuccess

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