Thanks Ryan,

I have been following that guide. I can configure the galaxy host to be an
exec host, although it makes more sense to be a submission host.

I hope this can be clarified in the future revise of the documentation.

Cheers,
Derrick


On Tue, Jan 10, 2012 at 12:57 PM, Ryan Golhar
<ngsbioinformat...@gmail.com>wrote:

> Derrick,
>
> Take a look at the section entitled "Job runner URL" on
> http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster.  But as I
> understand it, you don't need to do anything since the drmaa library is
> part of your SGE installation.  Just make the node Galaxy runs on an exec
> host.
>
> Ryan
>
> On Mon, Jan 9, 2012 at 8:45 PM, Derrick LIN <klin...@gmail.com> wrote:
>
>> Hi guys,
>>
>> I am trying to configure our test galaxy to run on our SGE cluster
>> http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster.
>>
>> This is my first time to come across to drmaa, so a bit confused.
>>
>> I installed teh galaxy on a NFS location where can be accessed
>> clsuter-wide. I have configured in universe_wsgi.ini:
>>
>> start_job_runners = drmaa
>> default_cluster_job_runner = drmaa:///
>>
>> and export the libdrmaa path:
>> export DRMAA_LIBRARY_PATH=/opt/sge/lib/lx-amd64/libdrmaa.so.1.0
>>
>> Sound like that's all. But I am not sure how galaxy can actually bind to
>> my cluster? Anywhere I need to specify the qmaster URL etc?
>>
>> Or simply configure galaxy host to be a submission host of the cluster,
>> the galaxy will fetch all information by itself?
>>
>> Kind regards,
>> Derrick
>>
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