On Fri, Jan 20, 2012 at 12:42 PM, Leandro Hermida
<soft...@leandrohermida.com> wrote:
> Hello,
>
> We've created a new binary datatype for .fastq.gz files following the
> same methodology as the BAM files since we don't want our fasta.gz
> files to be gunzipped.  I added the appropriate code in upload.py to
> make sure of this.  This new datatype and extension successfully does
> not gunzip our files.  But when we upload it into a data library via
> the data library "Upload via filesystem paths" it for some reason
> automatically strips the .gz part out. When we take the same .fastq.gz
> file and upload it via Get Data -> Upload File it works fine, nothing
> is stripped from file name. Where is it doing this and how can prevent
> from stripping the .gz via the data library menus?

I thought Galaxy would usually try to replace the extension
with *.dat for any file type when uploaded?

Peter

P.S. Is anyone working on the more general solution of
supporting a gzipped version of (almost) any Galaxy datatype?
https://bitbucket.org/galaxy/galaxy-central/issue/666/

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