On Jan 19, 2012, at 12:57 AM, Fields, Christopher J wrote:

> Just to add for the list, nate mentioned on IRC that running tests on an 
> external server likely doesn't work at the moment but that 
> ./scripts/functional_tests.py may have something to work with via environment 
> variables.

The tool config can be specified in:

    $GALAXY_TEST_TOOL_CONF

The config file is a bit trickier since many Galaxy config options can be 
overridden by environment variables or are set to something other than the 
normal default right in functional_tests.py.  You could change this line (147):

        global_conf = { '__file__' : 'universe_wsgi.ini.sample' }

To change the config default, however.

--nate

> chris
> 
> On Jan 18, 2012, at 8:03 PM, Fields, Christopher J wrote:
> 
>> Greg,
>> 
>> That seems to work mainly for running tests from the sample universe/tool 
>> config files, so it uses the local job runner.  What I would like to do is 
>> run tests using the actual Galaxy server configuration (which might use 
>> PBS/DRMAA and a cluster).  The method I mention from that page seemed to be 
>> for that purpose, but again it seems possibly out-of-date...
>> 
>> chris
>> 
>> On Jan 18, 2012, at 4:20 PM, Greg Von Kuster wrote:
>> 
>>> Hello Chris,
>>> 
>>> You should be able to run functional tests from the Galaxy install 
>>> directory using the following from the command line.
>>> 
>>> %sh run_functional_tests.sh
>>> 
>>> There are several options you can use as well.
>>> 
>>> Greg
>>> 
>>> On Jan 18, 2012, at 4:38 PM, Fields, Christopher J wrote:
>>> 
>>>> I have been following the basic protocol for running remote tests on a 
>>>> Galaxy server (in this case, our local one) using:
>>>> 
>>>> http://wiki.g2.bx.psu.edu/Admin/Running%20Tests
>>>> 
>>>>> From reading this, I assume the tests are to be run from the galaxy root 
>>>>> directory, like so:
>>>> 
>>>> GALAXY_TEST_EXTERNAL=1 GALAXY_TEST_HOST=my.local.galaxy.url  
>>>> GALAXY_TEST_PORT=8080 \
>>>>    ./nosetests.sh
>>>> 
>>>> However, no 'nosetests.sh' script exists there.  Should we be using 
>>>> ./scripts/nosetests.py?  ./scripts/functional_tests.py? 
>>>> 
>>>> Any clarification on this would be very helpful, we're just searching for 
>>>> a way to run tests in as automated a way as possible using the server 
>>>> configuration.
>>>> 
>>>> chris
>>>> 
>>>> 
>>>> Chris Fields
>>>> Senior Research Scientist
>>>> National Center for Supercomputing Applications
>>>> Institute for Genomic Biology
>>>> University of Illinois at Urbana-Champaign
>>>> 
>>>> 
>>>> ___________________________________________________________
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>>> 
>>> Greg Von Kuster
>>> Galaxy Development Team
>>> g...@bx.psu.edu
>>> 
>>> 
>>> 
>> 
>> 
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> 
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