Hi Alex,

I'm taking a look at some bitbucket issues today and this is one of them.  I'm 
wondering if you've figured anything out with this or are still having the same 
problems with MySQL.  If you are, please let me know and I'll see if I can 
recreate it.

--nate

On Sep 15, 2011, at 5:00 PM, Greg Von Kuster wrote:

> Alex,
> 
> I've created the following ticket for this issue as it looks to be a bug with 
> Galaxy / mysql.  You can follow the ticket to be aware of progress.
> 
> https://bitbucket.org/galaxy/galaxy-central/issue/660/galaxy-installation-with-mysql-database
> 
> Thanks for reporting this,
> 
> Greg Von Kuster
> 
> 
> On Sep 14, 2011, at 7:35 PM, Alex R Bigelow wrote:
> 
>> Hi,
>> I am trying to install a local instance of Galaxy with an infobright mysql 
>> server; I created a database called "galaxy" (the user is also "galaxy," and 
>> it has all the privileges it should need), and the database_connection line 
>> is as follows:
>> 
>> database_connection = 
>> mysql://galaxy:***********@localhost/galaxy?unix_socket=/tmp/mysql-ib.sock
>> 
>> When I do this, I get the following error:
>> Traceback (most recent call last):
>> File "/gen21/alex/Apps/galaxy-dist/lib/galaxy/web/buildapp.py", line 82, in 
>> app_factory
>>   app = UniverseApplication( global_conf = global_conf, **kwargs )
>> File "/gen21/alex/Apps/galaxy-dist/lib/galaxy/app.py", line 32, in __init__
>>   create_or_verify_database( db_url, kwargs.get( 'global_conf', {} ).get( 
>> '__file__', None ), self.config.database_engine_options )
>> File "/gen21/alex/Apps/galaxy-dist/lib/galaxy/model/migrate/check.py", line 
>> 65, in create_or_verify_database
>>   db_schema = schema.ControlledSchema( engine, migrate_repository )
>> File 
>> "/gen21/alex/Apps/galaxy-dist/eggs/sqlalchemy_migrate-0.5.4-py2.7.egg/migrate/versioning/schema.py",
>>  line 24, in __init__
>>   self._load()
>> File 
>> "/gen21/alex/Apps/galaxy-dist/eggs/sqlalchemy_migrate-0.5.4-py2.7.egg/migrate/versioning/schema.py",
>>  line 36, in _load
>>   self.table = Table(tname, self.meta, autoload=True)
>> File 
>> "/gen21/alex/Apps/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.7.egg/sqlalchemy/schema.py",
>>  line 108, in __call__
>>   return type.__call__(self, name, metadata, *args, **kwargs)
>> File 
>> "/gen21/alex/Apps/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.7.egg/sqlalchemy/schema.py",
>>  line 236, in __init__
>>   _bind_or_error(metadata).reflecttable(self, 
>> include_columns=include_columns)
>> File 
>> "/gen21/alex/Apps/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.7.egg/sqlalchemy/engine/base.py",
>>  line 1265, in reflecttable
>>   self.dialect.reflecttable(conn, table, include_columns)
>> File 
>> "/gen21/alex/Apps/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.7.egg/sqlalchemy/databases/mysql.py",
>>  line 1664, in reflecttable
>>   sql = self._show_create_table(connection, table, charset)
>> File 
>> "/gen21/alex/Apps/galaxy-dist/eggs/SQLAlchemy-0.5.6_dev_r6498-py2.7.egg/sqlalchemy/databases/mysql.py",
>>  line 1835, in _show_create_table
>>   raise exc.NoSuchTableError(full_name)
>> NoSuchTableError: migrate_version
>> 
>> I found this question in the archives:
>> http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-March/002216.html
>> 
>> As per both replies, I tried a virtual_env, which didn't work, and I also 
>> deleted the "galaxy" database so that it would create a fresh one, but, of 
>> course, now it can't connect to the database because it doesn't exist. How 
>> do I tell Galaxy to create the database it needs?
>> 
>> Thanks again for all the support,
>> Alex Bigelow
>> ___________________________________________________________
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> 
> Greg Von Kuster
> Galaxy Development Team
> g...@bx.psu.edu
> 
> 
> 
> 
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
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> 
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