Hi,
Thank you very much for your help. I have resolved the problem. I had
install MACS version 1.3 instead of MACS version 1.4. Now the tool is
working fine.

>
>
>
> On 01/24/2012 06:19 AM, Vidya .H.K wrote:
>> Hi,
>> Actually I am not computer expert as well. I have just started to work
>> in
>> this area. so I am not able to figure out how to solve this problem. I
>> request you to elaborate on what you meant in your previous mail.
>
> by simulating a complete command line I meant the following:
>
> You look how "macs_wrapper.py" is called by galaxy. This is written in
> the "macs_wrapper.xml" and then you execute the same command line.
>
> But I just realize, you have re-submitted the same question in a
> different e-mail thread again (unfortunately, again without a subject
> line).....
>
>
>>
>> Thanks in advance
>>
>>
>>
>>
>>
>>> As I wrote in my previous e-mail: "Please send all follow-up with a cc
>> to the mailing list ("reply-all")."
>>> In order to debug you situation you need to simulate a complete
>>> commandline, the same Galaxy is doing.
>>> Regards, Hans
>>> On 01/23/2012 05:35 AM, Vidya .H.K wrote:
>>>> Hi,
>>>> Sorry for delayed reply. When I execute "macs_wrapper.py" on command
>>>> line,
>>>> I get the following error.
>>>> python macs_wrapper.py
>>>>     File "<stdin>", line 1
>>>>       python macs_wrapper.py
>>>> Thanks in advance
>>>>> On 01/10/2012 06:31 AM, Vidya .H.K wrote:
>>>>>> Hi,
>>>>>> I think macs is exceutable with galaxy user.
>>>>> what happens if you execute "macs_wrapper.py" on the command line?
>> Regards, Hans
>>>>> PS: Please send all follow-up with a cc to the mailing list
>>>>> ("reply-all").
>>>>>>> On 01/09/2012 05:04 AM, Vidya .H.K wrote:
>>>>>>>> Hi,
>>>>>>>> I am new user to galaxy. I have installed galaxy on the Linux
>>>>>>>> local
>> server
>>>>>>>> for ChIP-seq analysis. While running MACS, an error is flagged
>>>>>>>>      "An error occurred running this job: /bin/sh: macs: not
>>>>>>>> found"
>> .
>>>>>>>> I have set the path for macs in /bin. But still the error
>>>>>>>> persists. It
>>>>>>>> would be great if any one help me resolve this problem.
>>>>>>> Hi Vidya
>>>>>>> Is macs executable for the galaxy user (ie the user the galaxy
>> server
>>>>>>> is
>>>>>>> running as) ?
>>>>>>> Regards, Hans
>>>>>>>> Thanks in advance.
>>>>>>>> Regards
>>>>>>>> vidya
>>>>>>>> ___________________________________________________________ Please
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>>>>>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>




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