I have tried running (on my local instance) a number of tools
(fasta_to_tabular, tandem_repeat_finder, others) on my fasta file but keep
getting the error Error executing tool: 'fasta' after file execution. In
the log file I see this
10.1.1.119 - - [27/Jan/2012:15:47:15 -0400] "GET
/tool_runner?tool_id=fasta2tab HTTP/1.1" 200 - "
http://domain:8080/root/tool_menu" "Mozilla/5.0 (Windows NT 5.2; WOW64;
rv:6.0) Gecko/20100101 Firefox/6.0"
galaxy.tools ERROR 2012-01-27 15:47:17,647 Exception caught while
attempting tool execution:
Traceback (most recent call last):
File "/Galaxy/galaxy_dist/lib/galaxy/tools/__init__.py", line 1184, in
_, out_data = self.execute( trans, incoming=params, history=history )
File "/Galaxy/galaxy_dist/lib/galaxy/tools/__init__.py", line 1503, in
return self.tool_action.execute( self, trans, incoming=incoming,
set_output_hid=set_output_hid, history=history, **kwargs )
File "/Galaxy/galaxy_dist/lib/galaxy/tools/actions/__init__.py", line
199, in execute
build_fasta_dataset = trans.app.model.HistoryDatasetAssociation.get(
custom_build_dict[ 'fasta' ] )
The fasta file is ok because I have a development installation and the
tools work fine there. So there is something wrong with my production
I did a diff between the files galaxy_dist/lib/galaxy/tools/__init__.py
and lib/galaxy/tools/actions/__init__.py but they are the same.
Any help would be much appreciated.
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