On Jan 25, 2012, at 5:28 AM, Praveen Baskaran wrote:
> i have installed local instance of galaxy and have a small problem with
> samtools. when i try to convert sam file to bam, the result pane shows that
> the job is running (for several hours). but when check the galaxy log file,
> it shows that the job is finished normally. i can also find the result (bam)
> file in galaxy/database/files/000/ folder. can anyone help to resolve this
Please change the following in your universe_wsgi.ini:
set_metadata_externally = True
And let us know if this makes a difference. Most likely, the tool output is
very large and the Galaxy process is setting metadata on it. With metadata set
externally, you'll be able to see this step as a separate process.
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Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: