On Jan 25, 2012, at 10:37 AM, Leandro Hermida wrote: > Hello, > > In the latest galaxy-dist version when running the system cleanup commands in > the documented order I get an error when running the purge_datasets.sh script: > > sh delete_userless_histories.sh > sh purge_histories.sh > sh purge_libraries.sh > sh purge_folders.sh > sh delete_datasets.sh > sh purge_datasets.sh > Traceback (most recent call last): > File "./scripts/cleanup_datasets/cleanup_datasets.py", line 518, in <module> > if __name__ == "__main__": main() > File "./scripts/cleanup_datasets/cleanup_datasets.py", line 116, in main > purge_datasets( app, cutoff_time, options.remove_from_disk, info_only = > options.info_only, force_retry = options.force_retry ) > File "./scripts/cleanup_datasets/cleanup_datasets.py", line 353, in > purge_datasets > _purge_dataset( app, dataset, remove_from_disk, info_only = info_only ) > File "./scripts/cleanup_datasets/cleanup_datasets.py", line 478, in > _purge_dataset > print "Error attempting to purge data file: ", dataset.file_name, " error: > ", str( exc ) > File > "/gpfshpc/software/pmrdcdb/galaxy/galaxy_dist_dev/lib/galaxy/model/__init__.py", > line 651, in get_file_name > assert self.object_store is not None, "Object Store has not been > initialized for dataset %s" % self.id > AssertionError: Object Store has not been initialized for dataset 58 > > What could be going wrong?
Hi Leandro, This is a bug that cropped up when we added the object store backend to Galaxy. I'm working on a fix which should be available in the next release of Galaxy. Sorry for the inconvenience. Thanks, --nate > > regards, > Leandro > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/