On Jan 25, 2012, at 10:37 AM, Leandro Hermida wrote:

> Hello,
> 
> In the latest galaxy-dist version when running the system cleanup commands in 
> the documented order I get an error when running the purge_datasets.sh script:
> 
> sh delete_userless_histories.sh
> sh purge_histories.sh
> sh purge_libraries.sh
> sh purge_folders.sh
> sh delete_datasets.sh
> sh purge_datasets.sh
> Traceback (most recent call last):
>  File "./scripts/cleanup_datasets/cleanup_datasets.py", line 518, in <module>
>    if __name__ == "__main__": main()
>  File "./scripts/cleanup_datasets/cleanup_datasets.py", line 116, in main
>    purge_datasets( app, cutoff_time, options.remove_from_disk, info_only = 
> options.info_only, force_retry = options.force_retry )
>  File "./scripts/cleanup_datasets/cleanup_datasets.py", line 353, in 
> purge_datasets
>    _purge_dataset( app, dataset, remove_from_disk, info_only = info_only )
>  File "./scripts/cleanup_datasets/cleanup_datasets.py", line 478, in 
> _purge_dataset
>    print "Error attempting to purge data file: ", dataset.file_name, " error: 
> ", str( exc )
>  File 
> "/gpfshpc/software/pmrdcdb/galaxy/galaxy_dist_dev/lib/galaxy/model/__init__.py",
>  line 651, in get_file_name
>    assert self.object_store is not None, "Object Store has not been 
> initialized for dataset %s" % self.id
> AssertionError: Object Store has not been initialized for dataset 58
> 
> What could be going wrong?

Hi Leandro,

This is a bug that cropped up when we added the object store backend to Galaxy. 
 I'm working on a fix which should be available in the next release of Galaxy.  
Sorry for the inconvenience.

Thanks,
--nate

> 
> regards,
> Leandro
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