Thanks for your patience and help with this too!
I've upgraded to ebf72cda61e7, cleaned all up (db, tool_conf.xml and
shed_tool_conf.xml, file system) and restarted galaxy. The import of
tabular2html works without the version attribute in the section of the
tool_conf.xml file. After installing, I've restarted again and all is working
fine as expected. Thanks for the fix.
I've also tested the installation of bedtools into a new tool panel section and
it works fine too but I think it has never been an issue.
On 30 Jan 2012, at 17:46, Greg Von Kuster wrote:
> Thanks for all of your patience and help with this. You uncovered a problem
> that is very nice to have corrected. The fix is included in change set
> 6634:ebf72cda61e7 on our central repository. This change set will allow you
> to have section tags in your tool_conf.xml file that do not include version
> attributes. Selecting these sections to contain tools installed with a tool
> shed repository will now be functionally correct.
> Thanks again!
> On Jan 30, 2012, at 12:08 PM, Anne Pajon wrote:
>> Brilliant! It is working - no more server error and I now have a
>> shed_tool_conf.xml updated:
>> Let me know when you commit your next change set, so I will be able to test.
>> Thanks a lot for your help.
> Greg Von Kuster
> Galaxy Development Team
Anne Pajon, Ph.D.
Cancer Research UK - Cambridge Research Institute
Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE
anne.pa...@cancer.org.uk | +44 (0)7958 511 353
NOTICE AND DISCLAIMER
This e-mail (including any attachments) is intended for the above-named
person(s). If you are not the intended recipient, notify the sender
immediately, delete this email from your system and do not disclose or use for
We may monitor all incoming and outgoing emails in line with current
legislation. We have taken steps to ensure that this email and attachments are
free from any virus, but it remains your responsibility to ensure that viruses
do not adversely affect you.
Cancer Research UK
Registered in England and Wales
Company Registered Number: 4325234.
Registered Charity Number: 1089464 and Scotland SC041666
Registered Office Address: Angel Building, 407 St John Street, London EC1V 4AD.
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: