Actually, I found a way!  I can mount the remote filesystem using sshfs.

On Wed, Feb 1, 2012 at 12:36 PM, Nate Coraor <n...@bx.psu.edu> wrote:

> On Jan 4, 2012, at 2:52 PM, Ryan wrote:
>
> > I have a cluster (cluster A) set up with Galaxy.  Our sequencing data
> gets mapped to hg19, then the resulting BAM files are placed on a SAN
> connected to a different cluster (cluster B) that cluster A does not have
> NFS access to.  We cannot install an FTP server on cluster B either.  The
> only way to get data from cluster B to cluster A is to use scp.  Is there a
> way to set up a Data Library in Galaxy on cluster A that refers to
> non-local data and transfers the data from cluster B when needed?  Or is it
> possible to have a Galaxy instance on cluster B share data with a Galaxy
> instance on cluster A?
>
> Hi Ryan,
>
> There is not presently a way to temporarily pull data from other
> filesystems using scp or share data without a common filesystem.  You'll
> have to copy the data to cluster A and then load it into a library there.
>
> --nate
>
> >
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