On Feb 2, 2012, at 12:23 PM, Shantanu Pavgi wrote:
>
> The job scripts generated by galaxy contain following code. I was wondering
> what's the purpose of if-block after setting 'GALAXY_LIB="None"' assignment.
>
> {{{
> GALAXY_LIB="None"
> if [ "$GALAXY_LIB" != "None" ]; then
> if [ -n "$PYTHONPATH" ]; then
> PYTHONPATH="$GALAXY_LIB:$PYTHONPATH"
> else
> PYTHONPATH="$GALAXY_LIB"
> fi
> export PYTHONPATH
> fi
>
> }}}
Hi Shantanu,
That file is a template and GALAXY_LIB="%s" is filled with the value of
job_wrapper.galaxy_lib_dir. It won't always be None.
--nate
>
> --
> Shantanu
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