Just filed as Issue #714 on bitbucket.  I noticed that multiple input seems to 
be broken on workflows when selecting more that one file (a single file works). 
 This is happening on our local instance, using Jan 27 galaxy-dist release, as 
well as both main/test.g2.bx.psu.edu Galaxy servers (latter sites just report a 
server error).  Debugging output:

URL: http://galaxy.igb.uiuc.edu/workflow/run?id=a799d38679e985db
 line 143 in __call__
  app_iter = self.application(environ, start_response)
line 98 in __call__
  environ, self.app)
File '/home/a-m/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', 
line 539 in intercept_output
  app_iter = application(environ, replacement_start_response)
line 80 in __call__
  return self.application(environ, start_response)
 line 111 in __call__
  return self.app( environ, start_response )
 line 632 in __call__
  return self.application(environ, start_response)
File '/home/a-m/galaxy/galaxy-dist/lib/galaxy/web/framework/base.py', line 160 
in __call__
  body = method( trans, **kwargs )
File '/home/a-m/galaxy/galaxy-dist/lib/galaxy/web/controllers/workflow.py', 
line 1458 in run
  update_only=True, old_errors=old_errors )
File '/home/a-m/galaxy/galaxy-dist/lib/galaxy/tools/__init__.py', line 1460 in 
  value, error = check_param( trans, input, incoming_value, context )
File '/home/a-m/galaxy/galaxy-dist/lib/galaxy/tools/parameters/__init__.py', 
line 60 in check_param
  param.validate( filtered_value, trans.history )
File '/home/a-m/galaxy/galaxy-dist/lib/galaxy/tools/parameters/basic.py', line 
1547 in validate
  validator.validate( value, history )
File '/home/a-m/galaxy/galaxy-dist/lib/galaxy/tools/parameters/validation.py', 
line 185 in validate
  if value and value.missing_meta( check = self.check, skip = self.skip ):
AttributeError: 'list' object has no attribute 'missing_meta'

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