On Feb 6, 2012, at 1:05 PM, Nate Coraor wrote:

> 
> On Feb 3, 2012, at 7:30 AM, Peter Cock wrote:
> 
>> On Fri, Feb 3, 2012 at 11:55 AM, Ryan Golhar
>> <ngsbioinformat...@gmail.com> wrote:
>>> 'qstat -f | grep jobname' will give you the full jobname without truncation.
>> 
>> Sadly not on our version of SGE - which appears to be SGE 6.2u5 - you
>> get a bit more information but the job name is still truncated as before.
>> 
>>> Personally, I think the qstat reporting gives too little information.
>> 
>> I agree.
> 
> Try qstat -j <job_id>
> 
>>> I've written a perl script to parse the output of qstat -f to give a bit 
>>> more
>>> information.  So truncation of jobnames for qstat shouldn't be an issue.
>> 
>> Maybe you're right that it is possible to interrogate SGE for the full
>> name, but I still think Galaxy's job names could be more informative.
> 
> This was implemented for the PBS runner, I've carried over the format from 
> that to the DRMAA runner in e4d1dd3bdd0d.  The format is:
> 
>       g<job_id>_<tool_id>_<user_email>

Correction, you'll need 74b6319b38b4 since the only valid characters in a DRMAA 
job name are alphanumeric or underscores.

> 
> --nate
> 
>> 
>> Regards,
>> 
>> Peter
>> 
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> 
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