Thank you Dannon. That is helpful.

What if I need to specify multiple inputs per run (i.e. .csfasta + .qual
file)?

-Dave

On Mon, Feb 6, 2012 at 1:27 PM, Dannon Baker <dannonba...@me.com> wrote:

> Hi Dave,
>
> Yes, galaxy's standard run-workflow dialog has a feature where you can
> select multiple datasets as input for a single "Input Dataset" step.  To do
> this, click the icon referenced by the tooltip in the screenshot below to
> select multiple files.  All parameters remain static between executions
> except for the single input dataset that gets modified for each run, and
> that only one input dataset can be set to multiple files in this fashion.
>
> -Dannon
>
>
>
>
>
>
> On Feb 6, 2012, at 4:18 PM, Dave Lin wrote:
>
> Hi All,
>
> I'm looking to batch process 40 large data sets with the same galaxy
> workflow.
>
> This obviously can be done in a brute-force manual manner.
>
> However, is there a better way to schedule/invoke these jobs in batch
>
> 1) from the UI with a plugin
> 2) command-line
> 3) web-service
>
> Thanks in advance for any pointers.
> Dave
>
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