I have been struggling with this issue for quite a while now, and I
don't seem to find a solution (neither in situ nor in webo).
here it is:
Because of the confidentiality of our data, I have setup both a Galaxy
server and a UCSC Genome Browser locally on my server. Both are run
through Apache, using the same .htpasswd authentication method and file
(ie: same usernmae/password combo for each).
Everything works great except that I do not seem to be able to
send/receive data from Galaxy to UCSC and vice versa.
When I try to "get data" from UCSC main (my local instance), I get the
"Tool execution generated the following error message:
The remote data source application may be off line, please try again
later. Error: EOF when reading a line
The tool produced the following additional output:
Enter username for SG at 127.0.0.1:"
where SG is the AuthName in vhost.conf and 127.0.0.1 is UCSC's IP.
Whenever I try to to send data to UCSC ("Display at UCSC main" in the
history boxes), I get this guy:
401 Authorization Required"
Where 127.0.0.3 is galaxy's IP.
- hardcoded username:passowrd on UCSC's "send to galaxy" routine but to
- hardcode username:passowrd on Galaxy's definiton of UCSC's "main" URL,
but to no avail
- I have removed UCSC authentication, and everything works fine
- I have kept UCSC authentication and let Galaxy "open", doesn't work
- I remove authentication to both servers, and it all works cool.
Somehow, Galaxy doesn't like to talk to a protected UCSC browser.
I'll be happy to post my vhost.conf files if needed.
Can anyone help, please?
Thanks a lot,
Federico De Masi, PhD,
The Technical University of Denmark - DTU
Center for Biological Sequence Analysis - CBS
DK-2800 KGS. LYNGBY, DENMARK
Telephone: (+45) 45 25 24 21
Fax: (+45) 45 93 15 85
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