Hello Dannon

Could it be possible to have the input dataset's display name appended to the new history's name instead of plain numbers when the "Send results in a new history" option is checked?


This new feature is indeed veeeeery useful (thanks a million for it) but the numbered suffixes make it hard to track what new history belongs to which dataset.

Thanks,
L-A


Le 06/02/2012 23:00, Dannon Baker a écrit :
This method only works for single inputs at the moment, though eventually it'd 
be nice to allow pairing.  Another option for you would be to use the workflows 
API, with which you can definitely specify multiple inputs.  See 
workflow_execute.py in the scripts/api folder of your galaxy installation for 
one method of doing this.

-Dannon


On Feb 6, 2012, at 4:53 PM, Dave Lin wrote:

Thank you Dannon. That is helpful.


What if I need to specify multiple inputs per run (i.e. .csfasta + .qual file)?

-Dave

On Mon, Feb 6, 2012 at 1:27 PM, Dannon Baker<dannonba...@me.com>  wrote:
Hi Dave,

Yes, galaxy's standard run-workflow dialog has a feature where you can select multiple 
datasets as input for a single "Input Dataset" step.  To do this, click the 
icon referenced by the tooltip in the screenshot below to select multiple files.  All 
parameters remain static between executions except for the single input dataset that gets 
modified for each run, and that only one input dataset can be set to multiple files in 
this fashion.

-Dannon

<PastedGraphic-2.png>





On Feb 6, 2012, at 4:18 PM, Dave Lin wrote:

Hi All,

I'm looking to batch process 40 large data sets with the same galaxy workflow.

This obviously can be done in a brute-force manual manner.

However, is there a better way to schedule/invoke these jobs in batch

1) from the UI with a plugin
2) command-line
3) web-service

Thanks in advance for any pointers.
Dave

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