This is fixed in change set revision 6691:c9bdeba75bd1 on our central repo. Thanks very much for reporting this.
Greg On Feb 7, 2012, at 7:40 PM, Ira Cooke wrote: > Dear Greg, > > In the latest version of the galaxy-central code there seems to be a bug > preventing me from updating my tools. When I go to update a tool I get the > following error > > URL: > http://cookie.latrobe.edu.au:8300/admin_toolshed/browse_repositories?sort=name&f-deleted=False&operation=Get+updates&id=a3329e0bcb13f2c9 > File > '/var/www/galaxy/galaxyapp/eggs/Paste-1.6-py2.7.egg/paste/exceptions/errormiddleware.py', > line 143 in __call__ > app_iter = self.application(environ, start_response) > File '/var/www/galaxy/galaxyapp/eggs/Paste-1.6-py2.7.egg/paste/recursive.py', > line 80 in __call__ > return self.application(environ, start_response) > File > '/var/www/galaxy/galaxyapp/eggs/Paste-1.6-py2.7.egg/paste/httpexceptions.py', > line 632 in __call__ > return self.application(environ, start_response) > File '/var/www/galaxy/galaxyapp/lib/galaxy/web/framework/base.py', line 160 > in __call__ > body = method( trans, **kwargs ) > File '/var/www/galaxy/galaxyapp/lib/galaxy/web/framework/__init__.py', line > 173 in decorator > return func( self, trans, *args, **kwargs ) > File > '/var/www/galaxy/galaxyapp/lib/galaxy/web/controllers/admin_toolshed.py', > line 96 in browse_repositories > return self.check_for_updates( trans, **kwd ) > File '/var/www/galaxy/galaxyapp/lib/galaxy/web/framework/__init__.py', line > 173 in decorator > return func( self, trans, *args, **kwargs ) > File > '/var/www/galaxy/galaxyapp/lib/galaxy/web/controllers/admin_toolshed.py', > line 654 in check_for_updates > ( tool_shed_url, url_for( '/', qualified=True ), repository.name, > repository.owner, repository.changeset_revision ) > ValueError: unsupported format character '/' (0x2f) at index 1 > > Looking at the code there seems to be a typo on line 702 of admin_toolshed.py > > It reads > url = > '%/srepository/check_for_updates?galaxy_url=%s&name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' > % \ > > But I think it should be > url = > '%s/repository/check_for_updates?galaxy_url=%s&name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' > % \ > > > When I change this though I still get further errors ... seems like a query > to the database is not finding my toolshedrepository > > The new error is > > URL: > http://127.0.0.1:8300/admin_toolshed/update_to_changeset_revision?tool_shed_url=http://127.0.0.1:9009/&name=protk&owner=iracooke&changeset_revision=21e996f8c650&latest_changeset_revision=21e996f8c650 > File > '/Users/iracooke/Sources/galaxy-proteomics/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py', > line 364 in respond > app_iter = self.application(environ, detect_start_response) > File > '/Users/iracooke/Sources/galaxy-proteomics/eggs/Paste-1.6-py2.7.egg/paste/debug/prints.py', > line 98 in __call__ > environ, self.app) > File > '/Users/iracooke/Sources/galaxy-proteomics/eggs/Paste-1.6-py2.7.egg/paste/wsgilib.py', > line 539 in intercept_output > app_iter = application(environ, replacement_start_response) > File > '/Users/iracooke/Sources/galaxy-proteomics/eggs/Paste-1.6-py2.7.egg/paste/recursive.py', > line 80 in __call__ > return self.application(environ, start_response) > File > '/Users/iracooke/Sources/galaxy-proteomics/eggs/Paste-1.6-py2.7.egg/paste/httpexceptions.py', > line 632 in __call__ > return self.application(environ, start_response) > File > '/Users/iracooke/Sources/galaxy-proteomics/lib/galaxy/web/framework/base.py', > line 160 in __call__ > body = method( trans, **kwargs ) > File > '/Users/iracooke/Sources/galaxy-proteomics/lib/galaxy/web/framework/__init__.py', > line 173 in decorator > return func( self, trans, *args, **kwargs ) > File > '/Users/iracooke/Sources/galaxy-proteomics/lib/galaxy/web/controllers/admin_toolshed.py', > line 772 in update_to_changeset_revision > id=trans.security.encode_id( repository.id ), > AttributeError: 'NoneType' object has no attribute 'id' > > If I browse my database I can find an entry in the tool_shed_repositories > table which seems to have all the right data. > > > I'm getting these errors on the latest version of the galaxy-central code. > > Ira > > > > >
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