If they used a package install, I think the DRMAA libs for torque are normally 
separate.  For instance:

http://pkgs.org/download/torque-drmaa

If going from source, you can enable DRMAA compilation with --enable-drmaa; I 
don't recall if that is on by default (I don't think it is).

chris

On Feb 17, 2012, at 3:49 AM, Louise-Amélie Schmitt wrote:

> 
>> You don't need a full PBS server on that machine, just the client libraries 
>> and configuration.  i.e. if you can run 'qstat' from machine A and have it 
>> return the queue on machine B, that should be all you need.
>> 
> We asked the IT guys they did just that :) now qsub works fine from machine A!
> But I still have a problem:
> They have no libdrmaa.so anywhere! What should I do? If I understood 
> correctly it's part of the Fedstage DRMAA service provider, will it be enough 
> installing it on our Galaxy server?
> 
>> 
>> Torque's syntax allows you to specify the server name right in the runner 
>> URL, but pbs_python links against libtorque, which is part of the torque 
>> client, which must be installed somewhere on the local system.
>> 
> Ok, thanks a lot!
> 
> Best,
> L-A
> 
>>> Best,
>>> L-A
>>> 
>>> 
>>> Le 30/01/2012 18:20, Nate Coraor a écrit :
>>>> On Jan 30, 2012, at 12:07 PM, Louise-Amélie Schmitt wrote:
>>>> 
>>>>> Hi Nate,
>>>>> 
>>>>> Thanks for the leads!
>>>>> 
>>>>> But setting DRMAA_LIBRARY_PATH means I'm in trouble since the libraries 
>>>>> are on machine B which is maintained by our IT dept. I cannot access them 
>>>>> from machine A.
>>>>> 
>>>>> Is it a desperate situation? Will it work if I have a copy of those libs 
>>>>> somewhere? :/
>>>> Hi L-A,
>>>> 
>>>> The Galaxy server will need to be a submission host, so I believe it will 
>>>> have to have PBS Pro installed.  If it has this, then the FedStage DRMAA 
>>>> library should be installable on the same host.  It may be possible copy 
>>>> the libraries, although I don't know whether you'd be able to configure 
>>>> the server address without access to the directories in which the library 
>>>> will look for its configuration.
>>>> 
>>>> --nate
>>>> 
>>>>> Best,
>>>>> L-A
>>>>> 
>>>>> 
>>>>> Le 30/01/2012 17:18, Nate Coraor a écrit :
>>>>>> On Jan 30, 2012, at 7:37 AM, Louise-Amélie Schmitt wrote:
>>>>>> 
>>>>>>> Hi Nate,
>>>>>>> 
>>>>>>> Thanks for the info!
>>>>>>> 
>>>>>>> I'm trying to understand how the URL for DRMAA works but I don't 
>>>>>>> understand how we can set it so it uses a different machine.
>>>>>>> Our Galaxy runner runs on machine A and the cluster is on machine B, 
>>>>>>> where do I put B in the URL?
>>>>>>> 
>>>>>>> In the wiki there is this example:
>>>>>>> drmaa://[native_options]/
>>>>>>> I'm a bit confused, I would have expected something like:
>>>>>>> drmaa://[machine]/[native_options]/
>>>>>>> like for TORQUE. Did I miss something?
>>>>>> Hi L-A,
>>>>>> 
>>>>>> Hrm, I've only used it with SGE, which uses an environment variable to 
>>>>>> define the cell location, and LSF, which I don't remember, but I assume 
>>>>>> it used the default.  I think if you configure the PBS Pro client on the 
>>>>>> submission host and point DRMAA_LIBRARY_PATH at the correct libdrmaa, it 
>>>>>> will use your client configuration.  There are other PBS Pro users on 
>>>>>> the list who can hopefully chime in with more details.
>>>>>> 
>>>>>> --nate
>>>>>> 
>>>>>>> Best,
>>>>>>> L-A
>>>>>>> 
>>>>>>> 
>>>>>>> Le 19/01/2012 19:43, Nate Coraor a écrit :
>>>>>>>> On Jan 16, 2012, at 5:22 AM, Louise-Amélie Schmitt wrote:
>>>>>>>> 
>>>>>>>>> Hello,
>>>>>>>>> 
>>>>>>>>> We want to move Galaxy's jobs from our small TORQUE local install to 
>>>>>>>>> a big cluster running PBS Pro.
>>>>>>>>> 
>>>>>>>>> In the universe_wsgi.ini, I changed the cluster address as follows:
>>>>>>>>> default_cluster_job_runner = pbs:///
>>>>>>>>> to:
>>>>>>>>> default_cluster_job_runner = pbs://sub-master/clng_new/
>>>>>>>>> where sub-master is the name of the machine and clng_new is the queue.
>>>>>>>>> 
>>>>>>>>> However, I get an error when trying to run any job:
>>>>>>>>> 
>>>>>>>>> galaxy.jobs.runners.pbs ERROR 2012-01-16 11:10:00,894 Connection to 
>>>>>>>>> PBS server for submit failed: 111: Could not find a text for this 
>>>>>>>>> error, uhhh
>>>>>>>>> 
>>>>>>>>> This corresponds to the qsub error 111 (Cannot connect to specified 
>>>>>>>>> server host) which is, for some reason, caught by pbs_python as an 
>>>>>>>>> error of its own (111 not corresponding to any pbs_python error code, 
>>>>>>>>> hence the face-plant-message).
>>>>>>>>> 
>>>>>>>>> Our guess is that we might need to re-scramble the pbs_python egg 
>>>>>>>>> with PBS pro's libraries, is that correct?
>>>>>>>>> If it's the case, what do we have to set as LIBTORQUE_DIR?
>>>>>>>> Hi L-A,
>>>>>>>> 
>>>>>>>> pbs_python is only designed for TORQUE, I don't think it is compatible 
>>>>>>>> with the PBS Pro API.  For that, you need to use the drmaa runner, 
>>>>>>>> which uses the FedStage libdrmaa for PBS Pro.
>>>>>>>> 
>>>>>>>> --nate
>>>>>>>> 
>>>>>>>>> Thanks,
>>>>>>>>> L-A
>>>>>>>>> ___________________________________________________________
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> 
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