Hi Vipin,
That is a wonderful news and I am eager to see it in tool shed. I am
going to check tool shed frequently these days to get it asap.

Thanks
Lisa

On Wed, Feb 22, 2012 at 4:07 PM, Vipin TS <vipin...@gmail.com> wrote:
> Hi,
>
> We have the recent release version of DESeq at our Galaxy instance,
>
> http://galaxy.tuebingen.mpg.de/tool_runner?tool_id=deseq
>
> I will add the Galaxy wrapper for DESeq in community tool shed in few days.
>
> regards,
> --Vipin
>
>> Hi Lisa,
>>
>> I am going to send your question over to the galaxy-...@bx.psu.edu mailing
>> list so that the development community can offer feedback.
>>
>> http://wiki.g2.bx.psu.edu/Support#Starting_a_technical.2C_local.2BAC8-cloud_instance.2C_or_development_thread
>>
>> Th galaxy-user list is primarily for tool/data usage on the Galaxy public
>> server.
>> http://wiki.g2.bx.psu.edu/Mailing%20Lists
>>
>> Thanks,
>>
>> Jen
>> Galaxy team
>>
>>
>> -------- Original Message --------
>> Subject: [galaxy-user] R scripts for DESeq
>> Date: Tue, 21 Feb 2012 23:25:35 -0500
>> From: Liusong Yang <liusongyang2...@gmail.com>
>> To: galaxy-u...@lists.bx.psu.edu
>>
>> Hello,
>>
>> I am planning to put DESeq into galaxy. I am a newcomer for both
>> Galaxy and R. I have already read all of the related discussion in
>> this group. I also noticed that there are r_wrapper.sh and DESeq.xml
>> added into galaxy recently under the path of tools.
>>
>> These lines are from r_wrapper.sh.
>>
>> ### Run R providing the R script in $1 as standard input and passing
>> ### the remaining arguments on the command line
>>
>>
>> I guess this means we need to give the DESeq R script to the wrapper
>> as standard input. My question is where or what is the DESeq R
>> scripts? I installed R and DESeq package, but I can not fund anything
>> like DESeq.R or something similar? I feel so confusing now. Any
>> comments or suggestions would be absolutely appreciated!
>>
>> Thanks
>>
>> Lisa
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