Hi all,
I just updated our Galaxy from the latest dist to the latest central
release. When I had previously updatet to the dist release, the emboss
datatypes were installed as a shed tool. However when restarting the
server after the update the datatypes_conf.xml in the emboss shed
directory got deleted. After some back and forth I ended up with the
following error, which I can't seem to resolve.
galaxy.tool_shed.tool_shed_registry DEBUG 2012-02-24 16:32:28,780 Loaded
reference to tool shed: Galaxy main tool shed
galaxy.tool_shed.tool_shed_registry DEBUG 2012-02-24 16:32:28,780 Loaded
reference to tool shed: Galaxy test tool shed
Traceback (most recent call last):
File "/galaxy/galaxy_server/lib/galaxy/web/buildapp.py", line 82, in
app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
File "/galaxy/galaxy_server/lib/galaxy/app.py", line 58, in __init__
self.installed_repository_manager.load_proprietary_datatypes()
File "/galaxy/galaxy_server/lib/galaxy/tool_shed/__init__.py", line
21, in load_proprietary_datatypes
datatypes_config = metadata[ 'datatypes_config' ]
KeyError: 'datatypes_config'
Any help would be greatly appreciated! Thanks!
Sarah
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