We're currently trying to switch to a big cluster but we have a lot of
doubts and questions, especially since the I/O is a serious issue for
- We saw the outputs_to_working_directory option in the .ini file, but
it only concerns output files, is there a way to make a local copy of
all the input files in the job working directory? (including indices)
- Can we set the job working directory as an absolute path so it's local
to the nodes, like /tmp ?
- If it's possible, will the job working directories created for each
job be cleaned properly at the end?
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: