On Mon, Mar 19, 2012 at 1:28 PM, Greg Von Kuster <g...@bx.psu.edu> wrote:
> Hi Peter,
> Here is the error produced by attempting to load the hmmr.xml tool config
> into the tool shed.  With regard to tool validity, the definition of a valid
> tool in the tool shed has always been restricted to the tool properly
> loading in a Galaxy instance.  If a tool is not valid, it will not be
> returned in a search and it cannot be automatically installed (unless it
> belongs to a repository containing other valid tools).  I'll consider ways
> to list invalid tools contained in repositories in the tool shed, but the
> preference is for tool developers to share only valid tools, or the value of
> the tool shed will be significantly diminished over time.  Filtering out
> files that actually are not tools from a list of invalid tools could become
> a bit messy.

I see - I hope you can make some improvements for browsing the tool
shed for this kind of situation.

Thanks for confirming there was something the Tool Shed didn't like
in hmmer.xml (missing a hmmdb.loc.sample file). For the tool
uploader (in this case Edward) that kind of error is very helpful.


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