Dear all,
I followed the directions in
https://main.g2.bx.psu.edu/u/rkchak/p/data-transfer to set up the
Galaxy AMQP listener service so that the sample tracking system can
transfer datasets. When running
nohup sh run_galaxy_listener.sh &
Traceback (most recent call last):
File "scripts/galaxy_messaging/server/amqp_consumer.py", line 33, in <module>
from galaxy.web.api.requests import RequestsAPIController
File
"/gpfshpc/software/pmrdcdb/galaxy/galaxy_dist_dev/lib/galaxy/web/api/requests.py",
line 7, in <module>
from galaxy.web.base.controller import *
File
"/gpfshpc/software/pmrdcdb/galaxy/galaxy_dist_dev/lib/galaxy/web/base/controller.py",
line 17, in <module>
from galaxy.visualization.tracks.data_providers import get_data_provider
File
"/gpfshpc/software/pmrdcdb/galaxy/galaxy_dist_dev/lib/galaxy/visualization/tracks/data_providers.py",
line 11, in <module>
pkg_resources.require( "pysam" )
File
"/gpfshpc/software/pmrdcdb/galaxy/galaxy_dist_dev/lib/galaxy/eggs/__init__.py",
line 415, in require
raise EggNotFetchable( str( [ egg.name for egg in e.eggs ] ) )
galaxy.eggs.EggNotFetchable: ['pysam']
But Galaxy runs fine and the pysam eggs are already there for a long
time as they are used by Galaxy. What could be the problem?
kind regards,
Leandro
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