Hi all,

In order to ease sharing the developed Galaxy tools in our group, we want to launch a private Toolshed.

However, upon running ./run_community.sh, I got following error.

Traceback (most recent call last):
  File "./scripts/paster.py", line 34, in <module>
    command.run()
File "/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 84, in run
    invoke(command, command_name, options, args[1:])
File "/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 123, in invoke
    exit_code = runner.run(args)
File "/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/command.py", line 218, in run
    result = self.command()
File "/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py", line 276, in command
    relative_to=base, global_conf=vars)
File "/home/galaxy/galaxy-dist/eggs/PasteScript-1.7.3-py2.6.egg/paste/script/serve.py", line 313, in loadapp
    **kw)
File "/home/galaxy/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 204, in loadapp
    return loadobj(APP, uri, name=name, **kw)
File "/home/galaxy/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 224, in loadobj
    global_conf=global_conf)
File "/home/galaxy/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 248, in loadcontext
    global_conf=global_conf)
File "/home/galaxy/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 278, in _loadconfig
    return loader.get_context(object_type, name, global_conf)
File "/home/galaxy/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 413, in get_context
    section)
File "/home/galaxy/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 458, in _context_from_explicit
    value = import_string(found_expr)
File "/home/galaxy/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/deploy/loadwsgi.py", line 18, in import_string
    return pkg_resources.EntryPoint.parse("x="+s).load(False)
  File "/home/galaxy/galaxy-dist/lib/pkg_resources.py", line 1954, in load
    entry = __import__(self.module_name, globals(),globals(), ['__name__'])
File "/home/galaxy/galaxy-dist/lib/galaxy/webapps/community/buildapp.py", line 16, in <module>
    import galaxy.webapps.community.model
File "/home/galaxy/galaxy-dist/lib/galaxy/webapps/community/model/__init__.py", line 12, in <module>
    from mercurial import hg, ui
ImportError: No module named mercurial
Removing PID file community_webapp.pid

What I understand, there is a conflict between Python2.6 (manually installed under /opt) and Python2.4 (system-wide version). In version 2.6, I do not have mercurial available apparently.

Any hint about a fix?


Kind regards,
Joachim

--
Joachim Jacob, PhD

Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9 244.66.34
Bioinformatics Training and Services (BITS)
http://www.bits.vib.be
@bitsatvib


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