Le 26/03/2012 16:13, Nate Coraor a écrit :
On Mar 26, 2012, at 5:11 AM, Louise-Amélie Schmitt wrote:
I wanted to start the drmaa job runner and followed the instructions in the
wiki, but I have this error message when I start Galaxy:
galaxy.jobs ERROR 2012-03-23 15:28:49,845 Job runner is not loadable:
Traceback (most recent call last):
File "/g/funcgen/galaxy/lib/galaxy/jobs/__init__.py", line 1195, in
module = __import__( module_name )
ImportError: No module named drmaa
I checked /g/funcgen/galaxy/lib/galaxy/jobs/runners and it contains the
There was no drmaa egg so I made a copy of it from our other Galaxy install but
it didn't solve the problem.
I don't really know where to start looking, any idea?
There's an errant space in the runner name: ' drmaa'. I am going to guess that
your start_job_runners looks like:
start_job_runners = pbs, drmaa
Only the whitespace at the beginning and end of that parameter is stripped.
I've committed a fix for this that'll be in the next galaxy-dist, but in the
meantime, remove the space after the comma and the drmaa runner should load.
After a removing the space (and a facepalm) it now fetches the drmaa egg
and starts the module properly, thanks a lot!
I still have an issue though: When I use the run shell script Galaxy
crashes right before loading the drmaa runner (right after the pbs
runner is loaded). The weird thing is that when I launch the command
manually it works fine:
python ./scripts/paster.py serve universe_wsgi.runner.ini
--server-name=runner0 --pid-file=runner0.pid --log-file=runner0.log --daemon
The other weird thing is that I get no error message at all.
I'll try looking into it but if you have any idea about what's going
wrong, it would help greatly :)
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: