Thanks, your instructions below worked ok and I have reduced my 700GB to 1
No doubt a pile of genome tools don't work now but I don't need them.
I see this is described in the Wiki as well, but it was more concise below,
cp -r was fine for copying the remnants of /mnt/galaxyIndices.
> 2. The vast majority of the storage costs are fro the Gemome databases in
>> the 700GB /mnt/galaxyIndices, which I don't need. Can this be reduced to
>> the bare essentials ?
> You can do this manually:
> 1. Start a new Galaxy cluster (ie, one you can easily delete later)
> 2. ssh into the master instance and delete whatever genomes you don't
> need/want (these are all located under /mnt/galaxyIndices)
> 3. Create a new EBS volume of size that'll fit whatever's left on the
> original volume, attach it and mount it
> 4. Copy over the data from the original volume to the new one while
> keeping the directory structure the same (rsync is probably the best tool
> for this)
> 5. Unmount & detach the new volume; create a snapshot from it
> 6. For the cluster you want to keep around (while it is terminated), edit
> persistent_data.yaml in it's bucket on S3 and replace the existing snap ID
> for the galaxyIndices with the snapshot ID you got in the previous step
> 7. Start that cluster and you should have a file system from the new
> snapshot mounted.
> 8. Terminate & delete the cluster you created in step 1
> If you don't want to have to do this the first time around on your custom
> cluster, you can first try it with another temporary cluster and make sure
> it all works as expected and then move on to the real cluster.
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