Hi,

Try:
--no_overlap $singleOrPair.no_overlap

Best,
L-A


Le 28/03/2012 18:59, cai cai a écrit :
Hi All,
I am trying to add a tool to Galaxy, here is my xml configuration:
            ## Set params based on whether reads are single-end or paired.
            #if $singleOrPair.readType == "paired":
                --no_overlap $singleOrPair.readType.no_overlap
            #end if
<conditional name="singleOrPair">
<param name="readType" type="select" label="single end or paired end reads">
<option value="single">single end</option>
<option value="paired">paired end</option>
</param>
<when value="paired">
<param name="no_overlap" type="select" label="">
<option value="no">no</option>
<option value="yes">yes</option>
</param>
</when>
<when value="single" />
</conditional>
I met the following error. Could some let me know what is wrong?
Thank you very much.
Cai
Traceback (most recent call last):
   File "/mnt/galaxyTools/galaxy-central/lib/galaxy/jobs/runners/drmaa.py", 
line 124, in queue_job
     job_wrapper.prepare()
   File "/mnt/galaxyTools/galaxy-central/lib/galaxy/jobs/__init__.py", line 
372, in prepare
     self.command_line = self.tool.build_command_line( param_dict )
   File "/mnt/galaxyTools/galaxy-central/lib/galaxy/tools/__init__.py", line 
1585, in build_command_line
     command_line = fill_template( self.command, context=param_dict )
   File "/mnt/galaxyTools/galaxy-central/lib/galaxy/util/template.py", line 9, 
in fill_template
     return str( Template( source=template_text, searchList=[context] ) )
   File 
"/mnt/galaxyTools/galaxy-central/eggs/Cheetah-2.2.2-py2.6-linux-x86_64-ucs4.egg/Cheetah/Template.py",
 line 1004, in __str__
     return getattr(self, mainMethName)()
   File "cheetah_DynamicallyCompiledCheetahTemplate_1332953248_1_41760.py", 
line 96, in respond
*NotFound: cannot find 'no_overlap' while searching for 
'singleOrPair.readType.no_overlap'*


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