I downloaded galaxy and tried to run fastq_paired_end_joiner.py.
I got:
File "/bubo/glob/g3/gilad/galaxy/tools/fastq/fastq_paired_end_joiner.py", line 3, in <module> from galaxy_utils.sequence.fastq import fastqReader, fastqNamedReader, fastqWriter, fastqJoiner
ImportError: No module named galaxy_utils.sequence.fastq

I tried changing PYTHONPATH in various ways, to: ./galaxy/lib or ./galaxy/lib/galaxy_utils or ./galaxy/lib/galaxy_utils/sequence but to no avail.
My python version is 2.6.6.

I would very much appreciate your help.

Gilad Silberberg
Dept. of Molecular Biology&  Functional Genomics
Stockholm University
Svante Arrheniusväg 20C
10691 Stockholm, Sweden
Tel: +46-8-164135, Fax: +46-8-166488

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